Class: Labelset
URI: cell_annotation_schema:Labelset
classDiagram
class Labelset
click Labelset href "../Labelset"
Labelset : annotation_method
Labelset --> "0..1" AnnotationMethodOptions : annotation_method
click AnnotationMethodOptions href "../AnnotationMethodOptions"
Labelset : automated_annotation
Labelset --> "0..1" AutomatedAnnotation : automated_annotation
click AutomatedAnnotation href "../AutomatedAnnotation"
Labelset : description
Labelset : name
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
name | 1 String |
name of annotation key | direct |
description | 0..1 String |
The description of the dataset | direct |
annotation_method | 0..1 AnnotationMethodOptions |
The method used for creating the cell annotations | direct |
automated_annotation | 0..1 AutomatedAnnotation |
direct |
Usages
used by | used in | type | used |
---|---|---|---|
Taxonomy | labelsets | range | Labelset |
Identifier and Mapping Information
Schema Source
- from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
Mappings
Mapping Type | Mapped Value |
---|---|
self | cell_annotation_schema:Labelset |
native | cell_annotation_schema:Labelset |
LinkML Source
Direct
name: Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
slots:
- name
- description
- annotation_method
- automated_annotation
Induced
name: Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
attributes:
name:
name: name
description: name of annotation key
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: rdfs:label
alias: name
owner: Labelset
domain_of:
- Labelset
range: string
required: true
description:
name: description
description: The description of the dataset. e.g. 'A total of 15 retinal ganglion
cell clusters were identified from over 99K retinal ganglion cell nuclei in
the current atlas. Utilizing previous characterized markers from macaque, 5
clusters can be annotated.'
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: IAO:0000115
alias: description
owner: Labelset
domain_of:
- Labelset
- Taxonomy
range: string
annotation_method:
name: annotation_method
description: 'The method used for creating the cell annotations. This MUST be
one of the following strings: `''algorithmic''`, `''manual''`, or `''both''`'
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: annotation_method
owner: Labelset
domain_of:
- Labelset
range: annotation_method_options
automated_annotation:
name: automated_annotation
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: automated_annotation
owner: Labelset
domain_of:
- Labelset
range: AutomatedAnnotation