| algorithm_name |
Name of algorithm used to transfer annotation |
| algorithm_repo_url |
This field denotes the URL of the version control repository associated with ... |
| algorithm_version |
The version of the algorithm used (if applicable) |
| annotation_method |
The method used for creating the cell annotations |
| annotations |
|
| author_annotation_fields |
A dictionary of author defined key value pairs annotating the cell set |
| author_categories |
Categories of authorship for the annotation |
| author_contact |
Primary author's contact |
| author_list |
This field stores a list of users who are included in the project as collabor... |
| author_name |
Primary author's name |
| automated_annotation |
|
| cell_fullname |
This MUST be the full-length name for the biological entity listed in `cell_l... |
| cell_id |
Identifier for a single cell |
| cell_ids |
Cell barcode sequences/UUIDs used to uniquely identify the cells within the A... |
| cell_label |
This denotes any free-text term which the author uses to annotate cells, i |
| cell_ontology_term |
This MUST be the human-readable name assigned to the value of 'cell_ontology_... |
| cell_ontology_term_id |
This MUST be a term from either the Cell Ontology (https://www |
| cell_set_accession |
An identifier that can be used to consistently refer to the set of cells bein... |
| cellannotation_schema_version |
The schema version, the cell annotation open standard |
| cellannotation_timestamp |
The timestamp of all cell annotations published (per dataset) |
| cellannotation_url |
A persistent URL of all cell annotations published (per dataset) |
| cellannotation_version |
The version for all cell annotations published (per dataset) |
| cells |
By convention this is only used for annotation transfer labelsets |
| comment |
Free text comment on annotation transfer |
| confidence |
Normalised confidence score |
| datestamp |
Time and date review was last edited |
| description |
The description of the dataset |
| explanation |
Free-text review of annotation |
| id |
|
| labelset |
The unique name of the set of cell annotations |
| labelsets |
|
| marker_gene_context |
The context in which the marker genes given in the marker gene evidence field... |
| marker_gene_evidence |
Gene names explicitly used as evidence, which MUST be in the matrix of the An... |
| matrix_file_id |
A resolvable ID for a cell by gene matrix file in the form namespace:accessio... |
| name |
name of annotation key |
| negative_marker_gene_evidence |
Gene names explicitly used as evidence, which MUST be in the matrix of the An... |
| neurotransmitter_accession |
Accessions of cell neurotransmitter associated with this cell set |
| neurotransmitter_marker_gene_evidence |
List of gene names used as evidence for neurotransmitter association |
| neurotransmitter_rationale |
The free-text rationale which users provide as justification/evidence for sup... |
| orcid |
Primary author's orcid |
| parent_cell_set_accession |
A list of accessions of cell sets that subsume this cell set |
| rank |
A number indicating relative granularity with 0 being the most specific |
| rationale |
The free-text rationale which users provide as justification/evidence for the... |
| rationale_dois |
|
| reference_location |
This field denotes a valid URL of the annotated dataset that was the source o... |
| review |
Reviewer's verdict on the annotation |
| reviewer |
Review Author |
| reviews |
|
| source_node_accession |
accession of node that label was transferred from |
| source_taxonomy |
PURL of source taxonomy |
| synonyms |
List of synonyms |
| title |
The title of the dataset |
| transferred_annotations |
|
| transferred_cell_label |
Transferred cell label |