Class: AutomatedAnnotation
A set of fields for recording the details of the automated annotation algorithm used. (Common 'automated annotation methods' would include PopV, Azimuth, CellTypist, scArches, etc.)
URI: cell_annotation_schema:AutomatedAnnotation
classDiagram
class AutomatedAnnotation
click AutomatedAnnotation href "../AutomatedAnnotation"
AutomatedAnnotation : algorithm_name
AutomatedAnnotation : algorithm_repo_url
AutomatedAnnotation : algorithm_version
AutomatedAnnotation : reference_location
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
algorithm_name | 0..1 String |
Name of algorithm used to transfer annotation | direct |
algorithm_version | 1 String |
The version of the algorithm used (if applicable) | direct |
algorithm_repo_url | 1 String |
This field denotes the URL of the version control repository associated with ... | direct |
reference_location | 0..1 String |
This field denotes a valid URL of the annotated dataset that was the source o... | direct |
Usages
used by | used in | type | used |
---|---|---|---|
BicanLabelset | automated_annotation | range | AutomatedAnnotation |
Labelset | automated_annotation | range | AutomatedAnnotation |
Identifier and Mapping Information
Schema Source
- from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
Mappings
Mapping Type | Mapped Value |
---|---|
self | cell_annotation_schema:AutomatedAnnotation |
native | cell_annotation_schema:AutomatedAnnotation |
LinkML Source
Direct
name: AutomatedAnnotation
description: A set of fields for recording the details of the automated annotation
algorithm used. (Common 'automated annotation methods' would include PopV, Azimuth,
CellTypist, scArches, etc.)
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
slots:
- algorithm_name
- algorithm_version
- algorithm_repo_url
- reference_location
Induced
name: AutomatedAnnotation
description: A set of fields for recording the details of the automated annotation
algorithm used. (Common 'automated annotation methods' would include PopV, Azimuth,
CellTypist, scArches, etc.)
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
attributes:
algorithm_name:
name: algorithm_name
description: Name of algorithm used to transfer annotation
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: algorithm_name
owner: AutomatedAnnotation
domain_of:
- AnnotationTransfer
- AutomatedAnnotation
range: string
algorithm_version:
name: algorithm_version
description: The version of the algorithm used (if applicable). It MUST be a string
of the algorithm's version, which is typically in the format '[MAJOR].[MINOR]',
but other versioning systems are permitted (based on the algorithm's versioning).
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: algorithm_version
owner: AutomatedAnnotation
domain_of:
- AutomatedAnnotation
range: string
required: true
algorithm_repo_url:
name: algorithm_repo_url
description: This field denotes the URL of the version control repository associated
with the algorithm used (if applicable). It MUST be a string of a valid URL.
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: algorithm_repo_url
owner: AutomatedAnnotation
domain_of:
- AutomatedAnnotation
range: string
required: true
reference_location:
name: reference_location
description: "This field denotes a valid URL of the annotated dataset that was\
\ the source of annotated reference data. \nThis MUST be a string of a valid\
\ URL. The concept of a 'reference' specifically refers to 'annotation transfer'\
\ algorithms, whereby a 'reference' dataset is used to transfer cell annotations\
\ to the 'query' dataset."
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: reference_location
owner: AutomatedAnnotation
domain_of:
- AutomatedAnnotation
range: string