Class: BicanLabelset
URI: CAS:Labelset
classDiagram
class BicanLabelset
click BicanLabelset href "../BicanLabelset"
Labelset <|-- BicanLabelset
click Labelset href "../Labelset"
BicanLabelset : annotation_method
BicanLabelset --> "0..1" AnnotationMethodOptions : annotation_method
click AnnotationMethodOptions href "../AnnotationMethodOptions"
BicanLabelset : automated_annotation
BicanLabelset --> "0..1" AutomatedAnnotation : automated_annotation
click AutomatedAnnotation href "../AutomatedAnnotation"
BicanLabelset : description
BicanLabelset : name
BicanLabelset : rank
Inheritance
- Labelset
- BicanLabelset
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
rank | 0..1 Integer |
A number indicating relative granularity with 0 being the most specific | direct |
name | 1 String |
name of annotation key | Labelset |
description | 0..1 String |
The description of the dataset | Labelset |
annotation_method | 0..1 AnnotationMethodOptions |
The method used for creating the cell annotations | Labelset |
automated_annotation | 0..1 AutomatedAnnotation |
Labelset |
Usages
used by | used in | type | used |
---|---|---|---|
BicanTaxonomy | labelsets | range | BicanLabelset |
Identifier and Mapping Information
Schema Source
- from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
Mappings
Mapping Type | Mapped Value |
---|---|
self | CAS:Labelset |
native | cell_annotation_schema:BicanLabelset |
LinkML Source
Direct
name: Bican_Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
is_a: Labelset
slots:
- rank
class_uri: CAS:Labelset
Induced
name: Bican_Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
is_a: Labelset
attributes:
rank:
name: rank
description: A number indicating relative granularity with 0 being the most specific. Use
this where a single dataset has multiple keys that are used consistently to
record annotations and different levels of granularity.
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: rank
owner: Bican_Labelset
domain_of:
- Bican_Labelset
range: integer
name:
name: name
description: name of annotation key
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: rdfs:label
alias: name
owner: Bican_Labelset
domain_of:
- Labelset
range: string
required: true
description:
name: description
description: The description of the dataset. e.g. 'A total of 15 retinal ganglion
cell clusters were identified from over 99K retinal ganglion cell nuclei in
the current atlas. Utilizing previous characterized markers from macaque, 5
clusters can be annotated.'
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: IAO:0000115
alias: description
owner: Bican_Labelset
domain_of:
- Labelset
- Taxonomy
range: string
annotation_method:
name: annotation_method
description: 'The method used for creating the cell annotations. This MUST be
one of the following strings: `''algorithmic''`, `''manual''`, or `''both''`'
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: annotation_method
owner: Bican_Labelset
domain_of:
- Labelset
range: annotation_method_options
automated_annotation:
name: automated_annotation
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
alias: automated_annotation
owner: Bican_Labelset
domain_of:
- Labelset
range: AutomatedAnnotation
class_uri: CAS:Labelset