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Class: BicanLabelset

URI: CAS:Labelset

classDiagram class BicanLabelset click BicanLabelset href "../BicanLabelset" Labelset <|-- BicanLabelset click Labelset href "../Labelset" BicanLabelset : annotation_method BicanLabelset --> "0..1" AnnotationMethodOptions : annotation_method click AnnotationMethodOptions href "../AnnotationMethodOptions" BicanLabelset : automated_annotation BicanLabelset --> "0..1" AutomatedAnnotation : automated_annotation click AutomatedAnnotation href "../AutomatedAnnotation" BicanLabelset : description BicanLabelset : name BicanLabelset : rank

Inheritance

Slots

Name Cardinality and Range Description Inheritance
rank 0..1
Integer		 A number indicating relative granularity with 0 being the most specific direct
name 1
String		 name of annotation key Labelset
description 0..1
String		 The description of the dataset Labelset
annotation_method 0..1
AnnotationMethodOptions		 The method used for creating the cell annotations Labelset
automated_annotation 0..1
AutomatedAnnotation		 Labelset

Usages

used by used in type used
BicanTaxonomy labelsets range BicanLabelset

Identifier and Mapping Information

Schema Source

  • from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS

Mappings

Mapping Type Mapped Value
self CAS:Labelset
native cell_annotation_schema:BicanLabelset

LinkML Source

Direct

name: Bican_Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
is_a: Labelset
slots:
- rank
class_uri: CAS:Labelset

Induced

name: Bican_Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
is_a: Labelset
attributes:
  rank:
    name: rank
    description: A number indicating relative granularity with 0 being the most specific.  Use
      this where a single dataset has multiple keys that are used consistently to
      record annotations and different levels of granularity.
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    alias: rank
    owner: Bican_Labelset
    domain_of:
    - Bican_Labelset
    range: integer
  name:
    name: name
    description: name of annotation key
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: Bican_Labelset
    domain_of:
    - Labelset
    range: string
    required: true
  description:
    name: description
    description: The description of the dataset. e.g. 'A total of 15 retinal ganglion
      cell clusters were identified from over 99K retinal ganglion cell nuclei in
      the current atlas. Utilizing previous characterized markers from macaque, 5
      clusters can be annotated.'
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    slot_uri: IAO:0000115
    alias: description
    owner: Bican_Labelset
    domain_of:
    - Labelset
    - Taxonomy
    range: string
  annotation_method:
    name: annotation_method
    description: 'The method used for creating the cell annotations. This MUST be
      one of the following strings: `''algorithmic''`, `''manual''`, or `''both''`'
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    alias: annotation_method
    owner: Bican_Labelset
    domain_of:
    - Labelset
    range: annotation_method_options
  automated_annotation:
    name: automated_annotation
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    alias: automated_annotation
    owner: Bican_Labelset
    domain_of:
    - Labelset
    range: AutomatedAnnotation
class_uri: CAS:Labelset