Class: Labelset

URI: cell_annotation_schema:Labelset

classDiagram class Labelset click Labelset href "../Labelset" Labelset <|-- BicanLabelset click BicanLabelset href "../BicanLabelset" Labelset : annotation_method Labelset --> "0..1" AnnotationMethodOptions : annotation_method click AnnotationMethodOptions href "../AnnotationMethodOptions" Labelset : automated_annotation Labelset --> "0..1" AutomatedAnnotation : automated_annotation click AutomatedAnnotation href "../AutomatedAnnotation" Labelset : description Labelset : name

Inheritance

Labelset
- BicanLabelset

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 String	name of annotation key	direct
description	0..1 String	The description of the dataset	direct
annotation_method	0..1 AnnotationMethodOptions	The method used for creating the cell annotations	direct
automated_annotation	0..1 AutomatedAnnotation		direct

Usages

used by	used in	type	used
Taxonomy	labelsets	range	Labelset

Identifier and Mapping Information

Schema Source

from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS

Mappings

Mapping Type	Mapped Value
self	cell_annotation_schema:Labelset
native	cell_annotation_schema:Labelset

LinkML Source

Direct

name: Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
slots:
- name
- description
- annotation_method
- automated_annotation

Induced

name: Labelset
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
attributes:
  name:
    name: name
    description: name of annotation key
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    slot_uri: rdfs:label
    alias: name
    owner: Labelset
    domain_of:
    - Labelset
    range: string
    required: true
  description:
    name: description
    description: The description of the dataset. e.g. 'A total of 15 retinal ganglion
      cell clusters were identified from over 99K retinal ganglion cell nuclei in
      the current atlas. Utilizing previous characterized markers from macaque, 5
      clusters can be annotated.'
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    slot_uri: IAO:0000115
    alias: description
    owner: Labelset
    domain_of:
    - Labelset
    - Taxonomy
    range: string
  annotation_method:
    name: annotation_method
    description: 'The method used for creating the cell annotations. This MUST be
      one of the following strings: `''algorithmic''`, `''manual''`, or `''both''`'
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    alias: annotation_method
    owner: Labelset
    domain_of:
    - Labelset
    range: annotation_method_options
  automated_annotation:
    name: automated_annotation
    from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
    rank: 1000
    alias: automated_annotation
    owner: Labelset
    domain_of:
    - Labelset
    range: AutomatedAnnotation