Slot: cell_ontology_term_id
This MUST be a term from either the Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/cl) or from some ontology that extends it by classifying cell types under terms from the Cell Ontology
e.g. the Provisional Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/pcl) or the Drosophila Anatomy Ontology (DAO) (https://www.ebi.ac.uk/ols4/ontologies/fbbt).
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NOTE: The closest available ontology term matching the value within the field 'cell_label' (at the time of publication) MUST be used.
For example, if the value of 'cell_label' is 'relay interneuron', but this entity does not yet exist in the ontology, users must choose the closest available term in the CL ontology. In this case, it's the broader term 'interneuron' i.e. https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:0000099.
URI: RO:0002473
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
BicanAnnotation | no | |
Annotation | A collection of fields recording a cell type/class/state annotation on some s... | no |
Properties
- Range: CellTypeEnum
Identifier and Mapping Information
Schema Source
- from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
Mappings
Mapping Type | Mapped Value |
---|---|
self | RO:0002473 |
native | cell_annotation_schema:cell_ontology_term_id |
LinkML Source
name: cell_ontology_term_id
description: 'This MUST be a term from either the Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/cl)
or from some ontology that extends it by classifying cell types under terms from
the Cell Ontology
e.g. the Provisional Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/pcl) or
the Drosophila Anatomy Ontology (DAO) (https://www.ebi.ac.uk/ols4/ontologies/fbbt).
NOTE: The closest available ontology term matching the value within the field ''cell_label''
(at the time of publication) MUST be used.
For example, if the value of ''cell_label'' is ''relay interneuron'', but this entity
does not yet exist in the ontology, users must choose the closest available term
in the CL ontology. In this case, it''s the broader term ''interneuron'' i.e. https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:0000099.'
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: RO:0002473
alias: cell_ontology_term_id
domain_of:
- Annotation
range: CellTypeEnum