Slot: cell_label
_This denotes any free-text term which the author uses to annotate cells, i.e. the preferred cell label name used by the author. Abbreviations are exceptable in this field; refer to 'cell_fullname' for related details. _
Certain key words have been reserved:
- 'doublets' is reserved for encoding cells defined as doublets based on some computational analysis
- 'junk' is reserved for encoding cells that failed sequencing for some reason, e.g. few genes detected, high fraction of mitochondrial reads
- 'unknown' is explicitly reserved for unknown or 'author does not know'
- 'NA' is incomplete, i.e. no cell annotation was provided
URI: rdfs:label
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Annotation | A collection of fields recording a cell type/class/state annotation on some s... | no |
| CapAnnotation | no |
Properties
-
Range: String
-
Required: True
Identifier and Mapping Information
Schema Source
- from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | rdfs:label |
| native | cell_annotation_schema:cell_label |
LinkML Source
name: cell_label
description: "This denotes any free-text term which the author uses to annotate cells,\
\ i.e. the preferred cell label name used by the author. Abbreviations are exceptable\
\ in this field; refer to 'cell_fullname' for related details. \nCertain key words\
\ have been reserved:\n- `'doublets'` is reserved for encoding cells defined as\
\ doublets based on some computational analysis\n- `'junk'` is reserved for encoding\
\ cells that failed sequencing for some reason, e.g. few genes detected, high fraction\
\ of mitochondrial reads\n- `'unknown'` is explicitly reserved for unknown or 'author\
\ does not know'\n- `'NA'` is incomplete, i.e. no cell annotation was provided"
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: rdfs:label
alias: cell_label
domain_of:
- Annotation
range: string
required: true