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Slot: cell_ontology_term_id

This MUST be a term from either the Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/cl) or from some ontology that extends it by classifying cell types under terms from the Cell Ontology

e.g. the Provisional Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/pcl) or the Drosophila Anatomy Ontology (DAO) (https://www.ebi.ac.uk/ols4/ontologies/fbbt).

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NOTE: The closest available ontology term matching the value within the field 'cell_label' (at the time of publication) MUST be used.

For example, if the value of 'cell_label' is 'relay interneuron', but this entity does not yet exist in the ontology, users must choose the closest available term in the CL ontology. In this case, it's the broader term 'interneuron' i.e. https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:0000099.

URI: RO:0002473

Applicable Classes

Name Description Modifies Slot
Annotation A collection of fields recording a cell type/class/state annotation on some s... no
CapAnnotation no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS

Mappings

Mapping Type Mapped Value
self RO:0002473
native cell_annotation_schema:cell_ontology_term_id

LinkML Source

name: cell_ontology_term_id
description: 'This MUST be a term from either the Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/cl)
  or from some ontology that extends it by classifying cell types under terms from
  the Cell Ontology

  e.g. the Provisional Cell Ontology (https://www.ebi.ac.uk/ols/ontologies/pcl) or
  the Drosophila Anatomy Ontology (DAO) (https://www.ebi.ac.uk/ols4/ontologies/fbbt).


  NOTE: The closest available ontology term matching the value within the field ''cell_label''
  (at the time of publication) MUST be used.

  For example, if the value of ''cell_label'' is ''relay interneuron'', but this entity
  does not yet exist in the ontology, users must choose the closest available term
  in the CL ontology. In this case, it''s the broader term ''interneuron'' i.e.  https://www.ebi.ac.uk/ols/ontologies/cl/terms?obo_id=CL:0000099.'
from_schema: https://cellular-semantics.sanger.ac.uk/ontology/CAS
rank: 1000
slot_uri: RO:0002473
alias: cell_ontology_term_id
domain_of:
- Annotation
range: CellTypeEnum